PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g09320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 210aa    MW: 24230.8 Da    PI: 10.5402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g09320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-1826118197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffk++  +d +++++  lp +f+ ++  +k  s+ +++++++g sWev++  + +++  y+ ++GW++Fv++n L e++ v+F+++g ++f   v ++
  Tp1g09320  26 FFKIFQGADLSSESMRALPYDFI-RNAPQKDFSRNMVIRTQWGSSWEVEI--SMNPRFyYMEKRGWNQFVSDNALGENELVTFTHKGLMCF--SVNIY 118
                89999999***************.6656678999****************..999999566669********************9888999..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1819122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-1821124IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-1625119No hitNo description
PfamPF023623.4E-1626118IPR003340B3 DNA binding domain
PROSITE profilePS5086313.23926121IPR003340B3 DNA binding domain
SMARTSM010196.2E-2026121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MFPKKRKIGR TSSLDQSKED RKNLSFFKIF QGADLSSESM RALPYDFIRN APQKDFSRNM  60
VIRTQWGSSW EVEISMNPRF YYMEKRGWNQ FVSDNALGEN ELVTFTHKGL MCFSVNIYKE  120
NGKEVVTPRK PRTMASLSGI KKEEGESSNK DVKKDEERGE TMGGLQLKVR SKKSKESETS  180
TKKKIKSKKV ESTVPEFNNT IRKSFLGILV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g09320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558658.17e-93B3 domain-containing protein At3g17010-like
RefseqXP_022563510.17e-93B3 domain-containing protein At3g17010-like
SwissprotQ9LSP68e-73Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3P6GI561e-100A0A3P6GI56_BRAOL; Uncharacterized protein
STRINGBra018430.1-P1e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-65B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]