PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g11220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 184aa    MW: 20356.7 Da    PI: 4.6451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g11220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84e-16857155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa a++ a+ +l+g
  Tp1g11220  8 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAVAYDVAAMALKG 57
               68****9.55.6*********854...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-9857IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-18966IPR016177DNA-binding domain
PROSITE profilePS5103220.231965IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-27966IPR001471AP2/ERF domain
SMARTSM003801.1E-28971IPR001471AP2/ERF domain
CDDcd000184.85E-281065No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDSRKKDPVY RGIRCRSGKW VSEIREPKKT TRIWLGTYPT AEMAAVAYDV AAMALKGREA  60
VLNFPGSAGS YPVPGSTSAV DIRTAAAAAA AMKGCEKEEE EEEKAEKMNS SFSKSRSRDF  120
HVHDDMASSS WCGTEFMDED EFLNMPNMLA DMAEGMMVAP PSWISSDPSD HSPEHTNDEN  180
LWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1310651572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g11220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889943.12e-86ethylene-responsive transcription factor ERF027
SwissprotQ38Q393e-73ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP866e-85D7KP86_ARALL; DNA binding protein
STRINGfgenesh1_pm.C_scaffold_10010639e-86(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.15e-69ERF family protein