PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g11920

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Trihelix

Protein Properties

Length: 351aa MW: 40481.4 Da PI: 8.3044

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g11920	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.9	1e-26	39	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmr++gf rsp +C++kw+nl k++kk k++++++ s +++y++++e Tp1g11920 39 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMRDKGFDRSPSMCTDKWRNLLKEFKKAKHHDRGN---GSAKMSYYKEIE 120 ******************************************************************94...566899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.851	31	95	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.2E-4	32	100	IPR009057	Homeodomain-like
SMART	SM00717	0.0065	35	97	IPR001005	SANT/Myb domain
CDD	cd12203	3.22E-28	37	102	No hit	No description
Pfam	PF13837	3.6E-20	38	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MFVSDKPRPN DFYKDDNTNS STTARDMIID LPKKRAETWV QDETRSLIMF RRGMDGLFNT 60 SKSNKHLWEQ ISAKMRDKGF DRSPSMCTDK WRNLLKEFKK AKHHDRGNGS AKMSYYKEIE 120 DILRERSKKV TTTQYNKSPN TPTAKVDSFM QFTDKGFDDT SISFGSVEAT GRPALNLERR 180 LDHEGHPLAI TTVDAVAANG VPPWNWRENP GNGNQPFGGR VITVKFGDYT RRIGIDGSAE 240 AIKQTIRSAF GLRTRRAFWL EDEDQVVRCL DRDMPLGNYL LHVDDGLAIR VCHYDESNQL 300 PVHTEEKIFY TEEDYRDFLA RRGWTCLQVD GFRNIDNMDD LQPGALYRGV R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MFVSDKPRPN DFYKDDNTNS STTARDMIID LPKKRAETWV QDETRSLIMF RRGMDGLFNT  60
SKSNKHLWEQ ISAKMRDKGF DRSPSMCTDK WRNLLKEFKK AKHHDRGNGS AKMSYYKEIE  120
DILRERSKKV TTTQYNKSPN TPTAKVDSFM QFTDKGFDDT SISFGSVEAT GRPALNLERR  180
LDHEGHPLAI TTVDAVAANG VPPWNWRENP GNGNQPFGGR VITVKFGDYT RRIGIDGSAE  240
AIKQTIRSAF GLRTRRAFWL EDEDQVVRCL DRDMPLGNYL LHVDDGLAIR VCHYDESNQL  300
PVHTEEKIFY TEEDYRDFLA RRGWTCLQVD GFRNIDNMDD LQPGALYRGV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-55	33	118	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g11920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	0.0	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024009039.1	0.0	trihelix transcription factor GT-1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1J3JZA3	0.0	A0A1J3JZA3_NOCCA; Trihelix transcription factor GT-1 (Fragment)
STRING	Bostr.13671s0104.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]