PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g11980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 172aa    MW: 20203 Da    PI: 5.3544
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g11980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-1362112555
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                +++rr+++NRe+ArrsR RK+  ++eL   v  L + N+ L+++l++ ++ 
  Tp1g11980  62 RKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRNDNHCLIDKLNRVSES 112
                79*******************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.6E-1157112No hitNo description
SMARTSM003381.3E-1358122IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.16260112IPR004827Basic-leucine zipper domain
PfamPF001703.0E-1162112IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-1262111No hitNo description
CDDcd147022.18E-1563113No hitNo description
PROSITE patternPS0003606580IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MESEYFNMPS SPTSSSSFYY INGLMNNNNN NYSSSSNAHD LMMSNNSTSD DDHQQSMAID  60
ERKQRRMISN RESARRSRMR KQRHLDELWS QVIRLRNDNH CLIDKLNRVS ESHELALKEN  120
AKLKEETSDL RQLISEIKSN NEEDNNFLRE LEDSISNSRS DSDQRGRDFE LC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g11980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0271340.0AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBankAF3324300.0AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21F230.0AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691364.11e-99basic leucine zipper 43
SwissprotQ9FMC21e-32BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A078I5Z12e-98A0A078I5Z1_BRANA; BnaC01g30400D protein
STRINGBo5g017580.16e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.18e-93basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]