PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g13070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BBR-BPC
Protein Properties Length: 276aa    MW: 30683.9 Da    PI: 10.271
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g13070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind349.76.5e-10712761301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvensla 92 
                mdddg+  rn+gyyepa a++k nlglqlms+i +r++k+    r+ nl ++++++++++     m++    +++++       +++k++++l+v+++  
  Tp1g13070   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHPEPpihMSY----NWINQ-------QKDKFFNMLPVTTT-- 83 
                99**99..9*******999**************.9**************.*********999777888....*****.......899*******9986.. PP

  GAGA_bind  93 salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                   p++ +vl++t+s+ s+q+ l++  +q+e+++v+            ee + ++++k+k+  ++ ++ +k+kk +k+k+++    +++++ ++ +r+k 
  Tp1g13070  84 ---PNYGNVLPETSSAPSMQMnLHHhhSQTEENPVK-----------CEEGVVQTNKKRKQPGSKAGTATKAKKPRKPKEEN----SNNNTTNV-SRVKP 164
                ...9*****************433323444444444...........22222233333333446677778888888888733....22333332.689** PP

  GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289
                 kks+dlv+ngv++D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++np+DLk+hW
  Tp1g13070 165 AKKSVDLVINGVNMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHW 264
                **************************************************************************************************** PP

  GAGA_bind 290 AkHGtnkfvtir 301
                A+HGtnkfvtir
  Tp1g13070 265 ARHGTNKFVTIR 276
                ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.0E-981276IPR010409GAGA-binding transcriptional activator
SMARTSM012261.5E-1671276IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHPEPPI  60
HMSYNWINQQ KDKFFNMLPV TTTPNYGNVL PETSSAPSMQ MNLHHHHSQT EENPVKCEEG  120
VVQTNKKRKQ PGSKAGTATK AKKPRKPKEE NSNNNTTNVS RVKPAKKSVD LVINGVNMDI  180
SGLPVPICTC TGAPQQCYRW GCGGWQSACC TTNISMHPLP MSTKRRGARI SGRKMSQGAF  240
KKVLEKLASD GFNFGNPIDL KSHWARHGTN KFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g13070
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305511.10.0protein BASIC PENTACYSTEINE2
RefseqXP_006305512.10.0protein BASIC PENTACYSTEINE2
SwissprotQ9LDE21e-172BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1J3JLW80.0A0A1J3JLW8_NOCCA; Protein BASIC PENTACYSTEINE2
STRINGBostr.0124s0194.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-167basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]