PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g13090
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ZF-HD
Protein Properties Length: 167aa    MW: 19586.3 Da    PI: 10.0045
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g13090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.68e-25354259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 ++++Y+eC++NhAa+lG++a+DGC+E+ +       +a+  CaACgCHR++HRr +++
    Tp1g13090  3 SSCVYRECMRNHAAKLGSYAIDGCREYSQP------PAGDLCAACGCHRSYHRRIEVK 54
                 5789************************98......7888**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-17651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.964751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.6E-1791164IPR009057Homeodomain-like
SuperFamilySSF466891.16E-796163IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-30105164IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QPPAGDLCAA CGCHRSYHRR IEVKSSGQTT  60
RARFPFTSLR RVKQLARLKW KAAAEQQEDE EDTEETSTEE KMTVKRRRKS KFTAEQREAM  120
REYAAKLGWT LKDKRAVREE IRVFCEGIGV TRYLFKTWVN NNKKFYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g13090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069171e-172AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865231e-172AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039421e-172BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050271e-172BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026841e-172CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117884.13e-98PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW33e-94ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A078H8D48e-97A0A078H8D4_BRANA; BnaA09g45550D protein
TrEMBLA0A397Y4H38e-97A0A397Y4H3_BRACM; Uncharacterized protein
TrEMBLM4EDF28e-97M4EDF2_BRARP; Uncharacterized protein
STRINGBra026812.1-P1e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-94homeobox protein 32