PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g15440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24142.5 Da    PI: 9.328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g15440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.28.8e-235098149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k i+++s+r+vtfskRr g++KKA ELSvL++a++avi fs+ g++y +
  Tp1g15440 50 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVITFSKCGRIYSF 98
               689********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-2242116IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-2442101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.20742102IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-184464IPR002100Transcription factor, MADS-box
PfamPF003191.2E-215298IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-186479IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-1879100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEVRETSSI SYLTSNGQLQ NPNVLVSQTK KELTTRTPKT SRGRQRIEIK EIKEDSKRHV  60
TFSKRRRGLF KKAAELSVLT GAKIAVITFS KCGRIYSFGP VDTLIDKYRR KSPVNLDLYP  120
GEDVAEEEGK PWWERPVENV PEEDLEEYVA AMSVLREKLG QKIIERSNND RTAEIVPAWP  180
INMMGWKPTM DMRSLEDMTD GISRSHLGQN G
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g15440
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416719.21e-113MADS-box transcription factor 23
TrEMBLV4KYJ41e-110V4KYJ4_EUTSA; Uncharacterized protein
STRINGXP_006416719.11e-111(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-87M-type_MADS family protein