PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g16690

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 281aa MW: 32270.4 Da PI: 7.0062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g16690	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l ++k++G+ +W + +++ g+ R +k+c++rw++yl Tp1g16690 14 KGEWTVEEDQKLSTYIKEHGTCNWGSLPKKAGLQRRGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	53.6	5.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ E+e +++ ++ lG++ W++I+++m+ +Rt++++k++w++ Tp1g16690 67 RGKFTPREEEDIIKFHAVLGNR-WASISKRMP-NRTDNDIKNHWNSC 111 89******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.123	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-21	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.60E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.89	62	116	IPR017930	Myb domain
SMART	SM00717	3.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.67E-9	69	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGRMTSIDED GMKKGEWTVE EDQKLSTYIK EHGTCNWGSL PKKAGLQRRG KSCRLRWLNY 60 LKPGIKRGKF TPREEEDIIK FHAVLGNRWA SISKRMPNRT DNDIKNHWNS CLKKRLERKG 120 LDPMTHEPII INLSVKTETT PNVECHSCST STWPSLASPS SSPSSALARL LNKLAAGISS 180 RQHDLDRIKN ILSDRKITRS DHEDEKLKEV EEELKKDDEG KEDDIPKWNE EELRRFMEID 240 VMDYETTSSN GSFAFLESSV SPPYGIDHSV LYESNILDHL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-27	12	117	5	109	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g16690

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584516.1	1e-114	PREDICTED: transcription factor MYB34-like
TrEMBL	A0A0D3CBB1	1e-112	A0A0D3CBB1_BRAOL; Uncharacterized protein
STRING	Bo5g025730.1	1e-113	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18710.1	1e-100	myb domain protein 47