PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 251aa    MW: 29457.3 Da    PI: 6.0148
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.41.4e-23126175352
     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                k++s e++s y+++pi+ AAkeL++++T  K++CR++GI+RWPhRk  sl
  Tp1g16770 126 KTLSKETISLYYHMPITRAAKELNIGVTFFKKKCRELGIQRWPHRKFMSL 175
                789*******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.007106195IPR003035RWP-RK domain
PfamPF020421.4E-19127175IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMMKSFSNLE YDEVFGKEDK AFSFLQYSSH ESELTNNFFK LEDENLFSCN YDYYLPSASS  60
SLALPDLEPI SIVSHEDLLN EYGSVSWTEE ESHKRDDFDL VKKTETETTK ERRGVEDCAS  120
NCSIVKTLSK ETISLYYHMP ITRAAKELNI GVTFFKKKCR ELGIQRWPHR KFMSLQNLIK  180
NVEEKLEKVE GEGEENADKL RNALEKLEKE KKAIQEFPDL EFEDKTKRLR QACFKANHTR  240
KRRRVMSTLI T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239243RKRRR
2240244KRRRV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g16770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118097e-59AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026847e-59CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448256.11e-119PREDICTED: protein RKD1
SwissprotQ9M9U91e-108RKD1_ARATH; Protein RKD1
TrEMBLV4KB341e-117V4KB34_EUTSA; Uncharacterized protein
STRINGXP_006416567.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.18e-87RWP-RK domain-containing protein