PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ZF-HD
Protein Properties Length: 88aa    MW: 9791.93 Da    PI: 8.3755
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.72.9e-332279260
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                 ++vrY eC+kNhAa++Gg+avDGC+Efm+  g egt +al+CaACgCHRnFHRreve+e
    Tp1g16810 22 SNVRYVECQKNHAANIGGYAVDGCREFMAR-GGEGTDDALTCAACGCHRNFHRREVETE 79
                 689**************************9.8899********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-31188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-302376IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-272576IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3622675IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MKKRQVVIKQ RKSSYTTTSS SSNVRYVECQ KNHAANIGGY AVDGCREFMA RGGEGTDDAL  60
TCAACGCHRN FHRREVETEV VCEYSPPN
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g16810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118099e-90AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026849e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ2176089e-90DQ217608.1 Arabidopsis thaliana mini zinc finger 3 (MIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449968.18e-60PREDICTED: mini zinc finger protein 3
RefseqXP_018449997.18e-60PREDICTED: mini zinc finger protein 3
SwissprotQ2Q4934e-48MIF3_ARATH; Mini zinc finger protein 3
TrEMBLD7KH745e-52D7KH74_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2061__AT1G18835.19e-53(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94428114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-48mini zinc finger