PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g16840

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 488aa MW: 53854.3 Da PI: 6.5612

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g16840	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.7e-30	195	254	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Tp1g16840 195 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 254 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-31	180	256	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-27	188	256	IPR003657	WRKY domain
PROSITE profile	PS50811	28.334	190	256	IPR003657	WRKY domain
SMART	SM00774	3.3E-35	195	255	IPR003657	WRKY domain
Pfam	PF03106	3.5E-26	196	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEEAKEENRR LKSSLSRTKK EFEILQAQYN RLMVQHEDPD KFSPKRHHQD KDEDEDKERI 60 SEREELVLLS LGRRSKSPVP SGSMTNKEEK KKDLMDETGD DQNIDEHEKS SDQGLSVEFK 120 YKDLSIPSDK VTIDHNQDQE TTSLEVSNSN KIPSESNFGF KNDGDDHEDE EELLPQNLVK 180 KTRVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTIAPSCPVR KQVQRCSEDM 240 SILISTYEGT HNHPLPMSAT AMASATSAAA SMLLSGASSS AAAADLHGLN FSLSGNSIIP 300 KPKSPFLQTS SSHSTSGHPT VTLDLTASSS SQQSFLSMLN RFSAPPSNVS RSSSYPSTNL 360 NFSNNTNTLM NWGAGGGSRN EQYRAAYGNI GTHQQSPYHH MIETRTAGSS FDPFGRSSSS 420 STHSTQTNLD HVGVKNITHQ LQSLPAETIK AITTDPNFQS ALATALSSII GGDLKMDNLN 480 RNEAEKSP

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEEAKEENRR LKSSLSRTKK EFEILQAQYN RLMVQHEDPD KFSPKRHHQD KDEDEDKERI  60
SEREELVLLS LGRRSKSPVP SGSMTNKEEK KKDLMDETGD DQNIDEHEKS SDQGLSVEFK  120
YKDLSIPSDK VTIDHNQDQE TTSLEVSNSN KIPSESNFGF KNDGDDHEDE EELLPQNLVK  180
KTRVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTIAPSCPVR KQVQRCSEDM  240
SILISTYEGT HNHPLPMSAT AMASATSAAA SMLLSGASSS AAAADLHGLN FSLSGNSIIP  300
KPKSPFLQTS SSHSTSGHPT VTLDLTASSS SQQSFLSMLN RFSAPPSNVS RSSSYPSTNL  360
NFSNNTNTLM NWGAGGGSRN EQYRAAYGNI GTHQQSPYHH MIETRTAGSS FDPFGRSSSS  420
STHSTQTNLD HVGVKNITHQ LQSLPAETIK AITTDPNFQS ALATALSSII GGDLKMDNLN  480
RNEAEKSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	182	256	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g16840

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647136.1	0.0	probable WRKY transcription factor 61
Refseq	XP_013660242.1	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A078GAF5	0.0	A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBL	A0A3P5YSN3	0.0	A0A3P5YSN3_BRACM; Uncharacterized protein
TrEMBL	V4KB27	0.0	V4KB27_EUTSA; Uncharacterized protein
STRING	XP_006416557.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]