PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 319aa    MW: 35578.6 Da    PI: 6.5117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-1073112344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w
        Tp1g16920  73 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEDVKMIW 112
                      79******************.*********.*******9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.53E-1353124IPR009057Homeodomain-like
PROSITE profilePS5129416.16366120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-1667120IPR009057Homeodomain-like
SMARTSM007171.4E-1070118IPR001005SANT/Myb domain
PfamPF002498.7E-1073113IPR001005SANT/Myb domain
CDDcd001672.02E-873116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLQRPKKRKM VRSCSSKSKN PWTEEENAAQ KFAFASALPS KNGSATLKKI GLRRCGKSCR  60
VRKADNSGTK HESFTPEEED LIIKMHAAMG SRWPLIAQHL PGKTEEDVKM IWNSKLKKKL  120
SQMGIDHVTH RPFSHVLAEY GNINGGGTLN PNPLNHNGSV GRNHSLNEDS LQQQPDDSGD  180
LMFHLQAIKL MTESSNQVKP ESTFMYASSS SSNSSPPLFS STCSTIAQEN SEVNFTWSDF  240
LLDQETFHEN QQNHPDQTLD NLFDNEFSEA AAATMANTST PASQIEEESS SNGFVDSIIA  300
KEKELFLGYS SYLEQPFHF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g16920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416547.10.0transcription factor MYB35
TrEMBLV4KB200.0V4KB20_EUTSA; Uncharacterized protein
STRINGXP_006416547.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-170MYB_related family protein