PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g17110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 200aa    MW: 22379.5 Da    PI: 4.4761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g17110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19959155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Tp1g17110  9 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 59
               89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-20968IPR016177DNA-binding domain
PfamPF008479.7E-12959IPR001471AP2/ERF domain
CDDcd000188.05E-28969No hitNo description
Gene3DG3DSA:3.30.730.101.7E-281068IPR001471AP2/ERF domain
SMARTSM003801.4E-301073IPR001471AP2/ERF domain
PROSITE profilePS5103221.7461067IPR001471AP2/ERF domain
PRINTSPR003674.6E-91122IPR001471AP2/ERF domain
PRINTSPR003674.6E-93349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEGSSSMQSK YKGVRKRKWG KWVSEIRLPN SRERIWLGSY DSPEKAARAF DAALFCLRGG  60
GAKFNFPDNP PTINGGRNLS RSEIREAAAR FANSEENVAR EKNSTSDGRA GYEMTTQQES  120
SPSTSVASSS MMTMDIDSEF LSMLPTVGSG NFASDFGLFP GFDDFSDEYS GDRFREEISP  180
TDDYYQGDEI YDGSLYLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-15367772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g17110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083904e-69AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBankBT0061914e-69BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBankCP0026844e-69CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT29M84e-69AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306071.11e-102ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-103ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1J3H9Y41e-105A0A1J3H9Y4_NOCCA; Uncharacterized protein
STRINGBostr.7128s0526.1.p1e-104(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-104ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]