PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g17380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 90aa    MW: 10030.3 Da    PI: 9.5555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g17380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W  +a+ +g  ++++++k+++
        Tp1g17380 11 SWTSKQNKMFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKLHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214458IPR017877Myb-like domain
SMARTSM007176.4E-6860IPR001005SANT/Myb domain
SuperFamilySSF466893.2E-121065IPR009057Homeodomain-like
PfamPF002491.8E-51154IPR001005SANT/Myb domain
CDDcd001674.32E-51854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSMNSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KLHYDILVQD  60
LINIQQNLVP LPNYKTVDVG SKSRGINVSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29377276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g17380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0258085e-82AC025808.8 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence.
GenBankAK1190345e-82AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10.
GenBankAY5195245e-82AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds.
GenBankBT0056575e-82BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds.
GenBankCP0026845e-82CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459622.11e-44PREDICTED: protein RADIALIS-like 5
RefseqXP_010498374.11e-44PREDICTED: protein RADIALIS-like 5
RefseqXP_020870089.11e-44protein RADIALIS-like 5
SwissprotQ8GW754e-45RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN27e-47A0A087HPN2_ARAAL; Uncharacterized protein
STRINGA0A087HPN21e-47(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.12e-46RAD-like 5