PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g18430

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WOX

Protein Properties

Length: 188aa MW: 21281.8 Da PI: 7.7621

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g18430	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	71	131	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +p+ ++++e++++l ++ e++V++WFqNrRa+ k+ Tp1g18430 71 RHRWTPTSMQLQILESIYEEgSGTPNPRRIREITTELsqhgQIIEKNVYNWFQNRRARSKR 131 89***************99************************************97 PP
2	Wus_type_Homeobox	101	8.5e-33	70	133	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++y++G tPn ++i++it+eL+++G+i +kNV++WFQNr+aR+++kq Tp1g18430 70 NRHRWTPTSMQLQILESIYEEGSGTPNPRRIREITTELSQHGQIIEKNVYNWFQNRRARSKRKQ 133 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-14	63	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-16	64	134	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.718	67	132	IPR001356	Homeobox domain
SMART	SM00389	1.2E-12	69	136	IPR001356	Homeobox domain
Pfam	PF00046	9.1E-17	71	131	IPR001356	Homeobox domain
CDD	cd00086	3.42E-11	71	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MERESQNGAY VGRVMTEEQM EILRKQIAVY AVICEQLALL HNSLSSGRNR TGGGYFDPKV 60 ASSSTHKISN RHRWTPTSMQ LQILESIYEE GSGTPNPRRI REITTELSQH GQIIEKNVYN 120 WFQNRRARSK RKQPPTATTT GQVVDAAVTT EERSSGDSTG FESYDHILFP TPDLGIEHLL 180 DGRKFLES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g18430

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459763.1	1e-104	PREDICTED: putative WUSCHEL-related homeobox 10
Swissprot	Q9LM84	1e-102	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A178W4J5	1e-100	A0A178W4J5_ARATH; WOX14
TrEMBL	D7KJ49	1e-99	D7KJ49_ARALL; Homeobox-leucine zipper family protein
STRING	XP_010459763.1	1e-103	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-104	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]