PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g18680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SBP
Protein Properties Length: 1041aa    MW: 114667 Da    PI: 8.4026
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g18680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.2e-40133209177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk++
  Tp1g18680 133 MCQVDNCTHDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTT 209
                6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33127195IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017131208IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-37132210IPR004333Transcription factor, SBP-box
PfamPF031101.5E-28134207IPR004333Transcription factor, SBP-box
CDDcd002045.35E-7792930No hitNo description
SuperFamilySSF484032.03E-5838937IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-4838931IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MDEVGAQVAA PIFIHQSLSP MGRKRNLYHQ MPNRLVPSQP QPQRRDEWDS KMWDWDSRRF  60
EAKPVDAEVL RLGSEARVDS TSRNRNGAKE GEERGLDLNL GSCVNAVEDT TQAARPSKKV  120
RSGSPGGGGN RPMCQVDNCT HDLSHAKDYH RRHKVCEVHS KATKALVGKQ MQRFCQQCSR  180
FHLLSEFDEG KRSCRRRLAG HNRRRRKTTL PDEIASGVVG PGNRDNTSNT NMDLMALLTA  240
LACAQGKNEV KPMGSSAVPE REQLLQILNK INALPLPMDL VSKLNNIGSL ARKNLDHPVV  300
NTQNDMNGAS PSTMDLLAVL SATLGSSSPD ALAILSQGGF GTKDSDKTKS SSYDRCATTN  360
LERRTVGGER SSSSNQSPSQ DSDSHAQDTR SSLSLQLFTS SPEDESRPAV ASSRKYYSSA  420
SSNPVVDRSP SSSPVMQELF PLQTSPETMR SKNHRNTSPA RPGGCLPLEL FGASNRGAAN  480
PNFKGFGQQS GYASSGSDYS PPSLNSDAQD RTGKIVFKLL DKDPSQLPGT LRTEIYNWLS  540
NIPSEMESYI RPGCVVLSVY VAMSPAAWEQ LEQNLLQRVG VMLQDSYSGF WRNARFIVNT  600
GRQLASHKNG RIRCSKSWRT WNSPELISVS PVAVVAGEET SLVVRGRSLT NDGISVRCTQ  660
TGSYVSMEVT GAACKRAIFD ELNVNSFKVK NAQPGFLGRC FIEVENGFRC DSFPLIIANA  720
SICKELNCLE EEFHPKSQDM TEELTQTSDR CPTSREEILC FLNELGWLFQ KNQTSEPQGQ  780
SDFSLSRFKF LLICSVERDY CALIRTLLDM LVERNLMNDE LSREALDMLA EIQLVSRAVQ  840
RKSTKMVELL IHYCFVTPAA GSSSKKFVFL PNITGPGGIS PLHLAACTSG SDDLVDLLTN  900
DPQEIGLSSW NSLCDATGQT PYSYAAMRNN HTYNSLVARK LADKRNKQVS LNVESEIVDH  960
MGLSRRLSSE TNKSSCATCA TAALKYRRKG SGSHRLFPTP IIHSMLAVAT VCVCVCVFMH  1020
AFPIVRQGSH FSWGGLDYGS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31123207184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g18680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535540.0AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416342.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLV4KAJ10.0V4KAJ1_EUTSA; Uncharacterized protein
STRINGXP_006416342.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]