PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g18990
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 595aa    MW: 66881.5 Da    PI: 4.8572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g18990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4401.7e-1342265953374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++ev+P++kf++l+aN aI
  Tp1g18990 226 QILVSCARALSEGKSEEALSMVNELRHIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGYLAANGAI 322
                78*****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                +ea+ gee+vHiiDfdi+qG Q+++L+++ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++Ae  gv+f+f++ v ++++ +++++L +kpgE
  Tp1g18990 323 MEAIRGEEEVHIIDFDINQGNQYMTLIKTVAEIPGKRPRLRLTGIDDPESVqrSVGGLRIIGLRLEQLAEDHGVSFKFKA-VPSKTSIVSPSTLGCKPGE 421
                *************************************************9989999************************.7****************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                +l+Vn+++qlh+++desv++ + rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fdsl+++lpres+er++vEr++l+r+ivn+vac
  Tp1g18990 422 TLIVNFAFQLHHMPDESVTTVNLRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFDSLDMTLPRESQERMNVERQCLARDIVNIVAC 521
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg+er+er e ++kWr+r+++aGF+p p+s++++++++ l+++ +   y+++ee g+l ++W++++L+++SaWr
  Tp1g18990 522 EGEERIERYEVAGKWRARMMMAGFSPRPMSSRVTSNIQNLIKQQYCSKYKLKEEMGELHFCWEEKSLIVASAWR 595
                *********************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.478198575IPR005202Transcription factor GRAS
PfamPF035145.8E-132226595IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MVEQTVVREH IKARVMSLVR SAEPSAAAYR NPKLYSLNEN GYNSGGTSVE IFDPDRSKNT  60
CLTDDSYPSQ SYEKYFLDSP TDEFVQHPVG SGASVSSFGS LDSFPYQSRP VLGCSMEFQL  120
PFDSISTSST RLFGGYQPGT QSPSMDMVEE FDDEQMRSKI QELERALLGD EDDKMDGIDH  180
VMEIDNEWSY QNESQQHQDS PKESSSADSN SHVSSKEVVS QATPKQILVS CARALSEGKS  240
EEALSMVNEL RHIVSIQGDP SQRIAAYMVE GLAARMAASG KFLYRALKCK EPPSDERLAA  300
MQVLFEVCPC FKFGYLAANG AIMEAIRGEE EVHIIDFDIN QGNQYMTLIK TVAEIPGKRP  360
RLRLTGIDDP ESVQRSVGGL RIIGLRLEQL AEDHGVSFKF KAVPSKTSIV SPSTLGCKPG  420
ETLIVNFAFQ LHHMPDESVT TVNLRDELLH MVKSLNPKLV TVVEQDVNTN TSPFFPRFME  480
AYEYYSAVFD SLDMTLPRES QERMNVERQC LARDIVNIVA CEGEERIERY EVAGKWRARM  540
MMAGFSPRPM SSRVTSNIQN LIKQQYCSKY KLKEEMGELH FCWEEKSLIV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-562265956375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g18990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525710.0AK352571.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416300.10.0scarecrow-like protein 1
RefseqXP_024008197.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLV4L4H20.0V4L4H2_EUTSA; Uncharacterized protein
STRINGXP_006416300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]