PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g19970
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 302aa    MW: 34593.2 Da    PI: 7.6859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g19970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15113164155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Tp1g19970 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 164
                79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-13111168No hitNo description
Gene3DG3DSA:4.10.280.102.6E-14111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-17112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPVKAVVYPQ DPCGYFSNCK DFMFHDLYYQ EEVVAQDTKN NIDKLGQKQS SLENDKEDER  60
QRGDYHNQYP LIPSLEEELG LPTIDMENHP PMQQRRKRRR IRSNKNKEEI ENQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM GPRRTTTKIN  180
EADTSTSSLV GPFSDFFIFP QYSTKSSIAT KNSYSPAEIE VTVAEGHANI KIMAKKKPKQ  240
LLKLVVSIQS LRLTLLHLNV TTLDDSVLYS ISVKVEEGSQ LNTVDDIATA LNQIIRRIQE  300
ES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399QRRKRRR
29599RKRRR
396100KRRRI
4113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g19970
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663812.11e-176transcription factor bHLH94-like isoform X1
SwissprotQ9SK911e-165BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D3D7C21e-173A0A0D3D7C2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELQ41e-173A0A3P6ELQ4_BRAOL; Uncharacterized protein
STRINGBo7g057920.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-158bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]