PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g22660

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 290aa MW: 32245.1 Da PI: 9.2536

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g22660	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	156	211	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Tp1g22660 156 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 211 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.879	153	213	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-28	154	214	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-18	154	214	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-27	156	211	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-7	158	209	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSEHAHGKSE CSERTTSDCA VFEEFLPIKL NPSSSDEHES CEVDKDGGSE KVLDKDGGGG 60 KVPAENNGDK KKSDWLKSVQ LWNQSPDPLP KKDQTKVVVE IKRNGGAFQP FQKEKPSKTD 120 SQPVKAITPT PTTSSSTAET VGNKRESEKQ SQLHRKQRRC WSPELHRRFL HALQQLGGSH 180 VATPKQIRDL MKVDGLTNDE VKSHLQKYRL HTRRPATPAV TSGGENTQQP QIMVVEGIWV 240 PSHDEANNRV YAPVAVQPPR CPPSEQRSSR RCKSPTTYPS THTAHLLPLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-13	156	209	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-13	156	209	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-13	156	209	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-13	156	209	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-13	156	209	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g22660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415885.1	1e-135	transcription factor HHO3
Swissprot	Q9FPE8	1e-122	HHO3_ARATH; Transcription factor HHO3
TrEMBL	V4L3B6	1e-133	V4L3B6_EUTSA; Uncharacterized protein
STRING	XP_006415885.1	1e-134	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-125	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]