PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g24530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 311aa    MW: 33841.4 Da    PI: 9.3987
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g24530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.7e-382484262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  Tp1g24530 24 QQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 84
               67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-332782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9012882IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-272882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQSKNMIVAP SHQQQQQQQQ QQQQQPQLKC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR  60
YWTRGGTLRN VPVGGSYRKN KRVKRLATAT ATAASTASTT TSSSPNNPHH QISHFSSMNH  120
HPLFYGLSDH VSSCNSLPTI PSRFNDSLKT SSSSGLESEY LSSGFSGLSA LGLGLPHHMS  180
HDHTINGGFI NNSTTNKPFL LSGLFGSSVS SSSSTLLQHP HKHMNNGGEM MGQSHLQTLA  240
SLQDLHVGGN NEDVNKEGKL DQISGNINGF MSSSSLDPSN YNSIWNNASV VNGAWLDPTN  300
NNVGSSLTSL I
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g24530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934820.0AB493482.1 Arabidopsis thaliana At1g28310 mRNA for hypothetical protein, partial cds, clone: RAAt1g28310.
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-173PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-173dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-173dof zinc finger protein DOF1.4-like isoform X1
SwissprotQ9FZA41e-158DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-172A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-172A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-125Dof family protein