PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g25750

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 283aa MW: 31784 Da PI: 6.6286

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g25750	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.7	2.7e-34	140	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+++++tYeg+Hnh+ Tp1g25750 140 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIIITTYEGKHNHP 197 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.5E-36	124	199	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-30	131	199	IPR003657	WRKY domain
PROSITE profile	PS50811	32.925	134	199	IPR003657	WRKY domain
SMART	SM00774	8.9E-40	139	198	IPR003657	WRKY domain
Pfam	PF03106	8.2E-27	140	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDDQADHKNT SLDEVSFTNV TNCLQSSLVM DYNSLEKAFE FSPYSSPFQA ISPSNIGQIG 60 NHPYFNLNPN SPIVSSSSNE ADPKENLGDE SGPMEDNEGD QHGVGESSKQ LTKQGKGKGE 120 KKEREARVSF MTKSEIDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC NVKKRVERSF 180 QDPSIIITTY EGKHNHPIPS TLRGPLAAEH LLGHGGSSLL HSFPRHHQEF LMMNQHPVNY 240 QSVGSISYQQ SHGNSSNYGN DQPVVDYGLL QDIVPSMFLK HES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	132	200	10	78	Probable WRKY transcription factor 4
2lex_A	5e-28	132	200	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00168	DAP	Transfer from AT1G29860	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g25750

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593152	0.0	KM593152.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY70) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013718049.1	1e-165	probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-146	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0A7RI88	1e-163	A0A0A7RI88_BRAOC; WRKY70 protein
STRING	Bo7g044930.1	1e-156	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-134	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]