PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g25810

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 243aa MW: 26757.1 Da PI: 4.3809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g25810	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	191	227	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a +L +Av+Y+ksL Tp1g25810 191 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 227 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.928	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-7	191	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-5	191	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQNNQFPHFS DEMGDGNMNV PYASASSFDA LFPPCAKLPF HGVELQPSAV CPKNFVIFDQ 60 TYDRSQVMYH PELTHRLANS PSLNGLASTF QNEYVGESFG NYCQEVSSSH QEDPNEIDAL 120 LSADEDYEDD NDDDENEDGG DSEEVSTVRN SSRDYGNTSA ESCCSSYGYS SSSRKQSLSG 180 SASCNNDGKG RKKMKKMMGV LRRIVPGGEQ MNTACVLDEA VQYLKSLKIE AQKRGVGHFS 240 NQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	GRKKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g25810

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353252	0.0	AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499513.2	1e-131	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-128	BH144_ARATH; Transcription factor bHLH144
TrEMBL	D7KEN4	1e-127	D7KEN4_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__3161__AT1G29950.1	1e-128	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-110	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]