PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YA
Protein Properties Length: 192aa    MW: 21588.1 Da    PI: 8.2557
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.31.3e-33102158158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RRq+Rakle+++k+  ksrkpylheSRh hA+rRpRg+gGrF
  Tp1g26340 102 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-VKSRKPYLHESRHLHAIRRPRGCGGRF 158
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-38100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.642101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-28103158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-24104126IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860106126IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-24135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASSIHELSD NIEIHQKQEQ RDSQIQLPIP PGRSSESIAT SLIYSTEQLP HSMAPGHYPY  60
PDPYYRSIFA PPCDTQAYPP RPYAGLMGIQ QPGVPLPSDA VEEPVFVNAK QYHGILRRRQ  120
SRAKLESQNK VVKSRKPYLH ESRHLHAIRR PRGCGGRFLN AKKDDEHHED NHEENSNLSS  180
AKSAMAASSD TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22101170171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g26340
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008366.11e-110nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP11e-103NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1J3FZH41e-108A0A1J3FZH4_NOCCA; Nuclear transcription factor Y subunit A-7
STRINGBostr.15697s0348.1.p1e-103(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-91nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]