PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26970
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28730.7 Da    PI: 7.715
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.4e-231158350
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                e+k +rqvtf+kR++ ++KKA+ELS+LCd+ v +iifs+++kly + 
  Tp1g26970 11 LEDKVKRQVTFAKRKKSLMKKAHELSILCDVPVGLIIFSQSDKLYAFN 58
               699******************************************996 PP
2K-box39.22.9e-14881611285
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 + +++++  + + +ei+nL+ ++R + G +L+ L++ eL + e qL +sl++ R++K el+++q ++   k k
  Tp1g26970  88 DHKSNCEETKESMIREIDNLKMNLRLYGGHGLNLLTYDELLRFELQLASSLQNARARKFELMHQQQQTDESKAK 161
                45566677778999*************************************************98776544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.175161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
CDDcd002651.84E-31279No hitNo description
SuperFamilySSF554554.32E-25376IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-21323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-213859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-889173IPR002487Transcription factor, K-box
PROSITE profilePS5129710.48590189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRKGKVVIQK LEDKVKRQVT FAKRKKSLMK KAHELSILCD VPVGLIIFSQ SDKLYAFNSH  60
STSMENLIMR YQMAKEGHAA AVNSFHPDHK SNCEETKESM IREIDNLKMN LRLYGGHGLN  120
LLTYDELLRF ELQLASSLQN ARARKFELMH QQQQTDESKA KGKEILMDEE NQQFYHPGQG  180
SSWEHLMWQA ERQMMTCQKE EDDDVIRRQV KEEFPFYGDE HPTGFLQLLG TPPQSPSPSN  240
PDPKSGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-17184182MEF2C
5f28_B9e-17184182MEF2C
5f28_C9e-17184182MEF2C
5f28_D9e-17184182MEF2C
6byy_A1e-16184182MEF2 CHIMERA
6byy_B1e-16184182MEF2 CHIMERA
6byy_C1e-16184182MEF2 CHIMERA
6byy_D1e-16184182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g26970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306362.21e-102agamous-like MADS-box protein AGL63
SwissprotQ9SA074e-89AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A0D3CF401e-136A0A0D3CF40_BRAOL; Uncharacterized protein
STRINGBo5g065750.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.28e-91GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]