PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g27130

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Trihelix

Protein Properties

Length: 377aa MW: 41387.6 Da PI: 9.8553

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g27130	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.8	2.9e-18	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + Tp1g27130 19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrissgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109 ************777776666555666666677777777769999**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	2.7E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRISSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFGSESSSSA 120 AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFEVVESKT HPSSTAATAV TAAVAAAAAA 180 ATGSGNGSGG GLQIQKMIQQ QQGLGSVQKH QMIQPPPVLL PLPPPPPPPS QPPQPRPLLL 240 PPPPPPSFHA QPILPTVDTS PAKRRRTMPT TTAGPSGGGG NAETEEGETV VAAALSRSAS 300 VIANAIRESE ERQDRRHKEV MSLQERRLKI EESNVEMNRE GMNGLVEAIN KLASSILALA 360 SSSSSSRHSN QHQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRISSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFGSESSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFEVVESKT HPSSTAATAV TAAVAAAAAA  180
ATGSGNGSGG GLQIQKMIQQ QQGLGSVQKH QMIQPPPVLL PLPPPPPPPS QPPQPRPLLL  240
PPPPPPSFHA QPILPTVDTS PAKRRRTMPT TTAGPSGGGG NAETEEGETV VAAALSRSAS  300
VIANAIRESE ERQDRRHKEV MSLQERRLKI EESNVEMNRE GMNGLVEAIN KLASSILALA  360
SSSSSSRHSN QHQGGPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g27130

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353473	0.0	AK353473.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-44-G06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489615.1	1e-178	PREDICTED: protein SCARECROW-like isoform X2
TrEMBL	A0A087HS01	1e-177	A0A087HS01_ARAAL; Uncharacterized protein
STRING	A0A087HS01	1e-178	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	6e-72	Trihelix family protein