PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g27810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 432aa    MW: 46354.5 Da    PI: 8.4409
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g27810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.16.8e-22285347163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN  L+ e+++lk ++++l +e+
  Tp1g27810 285 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLNGENANLRAEINKLKSQYEELIAEN 347
                89*******************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.8E-291104IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.8E-40143261No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-18277343No hitNo description
SMARTSM003383.5E-20285349IPR004827Basic-leucine zipper domain
PfamPF001705.6E-20285347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.737287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-11288344No hitNo description
CDDcd147022.93E-23290340No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGSSEMEKSD KEKESKTPPP SSSAPAPVTS QEPSSAVSAG MATPDWSGFQ AYSPMPPHGY  60
VASSPQPHPY MWGVQHMMPP YGTPPHPYVA MYPPGGMYGH PSLPPGSYPY SPYAMPSPNG  120
MAETSGNTGS GIEGDAKQAE VKEKLPIKRS KGSLGSLNMI IGKNNETGKN SGASANGACS  180
KSGESASDGS SEGSDANSQN DSGSRHNGKN GETASDSAHG PPRNGSNQPV NQVVPIMPVS  240
ATGVPGPPTN LNIGMDYWSG HGNVSTTVPG VVVDGSQSQT WLQDERELKR QRRKQSNRES  300
ARRSRLRKQA ECDELAQRAD VLNGENANLR AEINKLKSQY EELIAENSAL KIEKLLFSLI  360
PVLLAESIFV SPVTKRSKLG QERGRTRDKH TSGCCGDNSW FLQQLSLTQE QQLTVLCNFR  420
NQSLSNLLVR FK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g27810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535050.0AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415248.10.0bZIP transcription factor 68
RefseqXP_024008293.10.0bZIP transcription factor 68
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLV4MPP30.0V4MPP3_EUTSA; Uncharacterized protein
STRINGXP_006415248.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]