PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g29080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 184aa    MW: 20918.2 Da    PI: 5.1017
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g29080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-202068355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ l+g
  Tp1g29080 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHLRG 68
               9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-351982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-311977IPR001471AP2/ERF domain
PROSITE profilePS5103223.421976IPR001471AP2/ERF domain
PfamPF008472.1E-131968IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-222077IPR016177DNA-binding domain
CDDcd000182.70E-192078No hitNo description
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNHVSQRE QRCAIDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
AAALHLRGRG THLNFPEHAG SFPRPESSSS EHVQAAAQEA ALMFKPGGSS TEQDLGSGQG  120
ISRVGLSPEQ IQAINEFPLD SPRMGWMQDL EVNDYEELYG RFFGQCDKDE FFEMQQLQSI  180
WDFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162081668ATERF1
3gcc_A2e-162081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g29080
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415065.11e-110ethylene-responsive transcription factor ERF022
SwissprotQ9LQ286e-98ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLV4L1041e-108V4L104_EUTSA; Uncharacterized protein
STRINGXP_006415065.11e-109(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.15e-99ERF family protein