PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g32970
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 254aa    MW: 28651.9 Da    PI: 4.2664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g32970genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.6e-1169110146
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                sg++GV++++   r+++eIrd +     + kr ++g+f+t e Aa a+
  Tp1g32970  69 SGIRGVWRRP-CERFAVEIRDpF-----QkKRKWIGTFDTVEAAAGAY 110
                79****9999.7*********55.....34**********77777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1269119IPR016177DNA-binding domain
CDDcd000182.35E-1369125No hitNo description
PfamPF008471.2E-669110IPR001471AP2/ERF domain
PROSITE profilePS5103214.34170127IPR001471AP2/ERF domain
SMARTSM003803.6E-670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1372120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVSSIKSVPV VCDDPYATES SSEDEVISSN NTHRPTKPKR YVSKICVGTL MERSNSTLEK  60
VTGNQKSSSG IRGVWRRPCE RFAVEIRDPF QKKRKWIGTF DTVEAAAGAY QRRKIDFEEQ  120
LGQVNQTGSI KQYAIDVDLT KTCVSSKKKE KEVEDLTKSS NDLLFSPPKT FGFGCDDDDG  180
EEGAIARMME DPLMTSSISE IFADNDLWVD PMIDDLQLSD VLFDDITMDD LGEADEVDSW  240
FNATTDWDRY ESFL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g32970
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393309.12e-68ethylene-responsive transcription factor ERF117
SwissprotQ9M9B22e-56EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLV4JYL35e-67V4JYL3_EUTSA; Uncharacterized protein
STRINGXP_006393309.19e-68(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-48ERF family protein