PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 397aa    MW: 42906.1 Da    PI: 9.583
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.34.6e-15320375560
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ +  ++ ++ ++ +
  Tp1g34100 320 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQAKIMEMQKNQE 375
                79***************************************999888888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-13316380IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.151318369IPR004827Basic-leucine zipper domain
PfamPF001701.3E-12320376IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11320369No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-14320369No hitNo description
CDDcd147073.95E-27320374No hitNo description
PROSITE patternPS000360323338IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MNFKNNNLGN EQPPGDGGGG GALTRQGSIY SLTFDEFQSS LGKDYVSMNM DELLKNIWSA  60
EETQAMAMAA STSGIIPLTG GQEGLPLQRQ GSLTLPRTLS TKTVDQVWKD LSKDGTNEET  120
NLTQPQSQSQ RQQTLGEVTL EEFLVRAGVV REEAQIAAKD KGGYFGNDAN TGFSVQASPR  180
VVPGLMGNLG AETVNHLQVQ GSTLPLNVNG ARSTYQQQQQ PIMPKQPGFG YGTQIGQFNS  240
PGIRGGLIGV GDQSLTNNMG VVQGAGAMGV GAVSLVTPLS SDGIGKNNGD YSSSLSPTPY  300
IFNGGVRGRK SGTVEKVVER RQRRMIKNRE SAARSRARKQ AYTVELEAEV AKLKEENDEL  360
QRKQAKIMEM QKNQEMEMMN LQGGAKKRLR RTESGPW
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9719720.0JQ971972.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 2 (ABF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561047.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
SwissprotQ9M7Q40.0AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A0D3CNT10.0A0A0D3CNT1_BRAOL; Uncharacterized protein
STRINGBo6g006970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-175abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]