PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34470
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 182aa    MW: 21124.8 Da    PI: 8.4612
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-1688134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++WT+eE+ +++++  ++G+g+Wk I+r+   +Rt+ q+ s+ qky
        Tp1g34470  88 RNPWTEEEHRRFLEGLDKFGKGDWKNISRMNVRTRTPTQVASHAQKY 134
                      79***************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-1280135IPR009057Homeodomain-like
PROSITE profilePS5129418.91383139IPR017930Myb domain
SuperFamilySSF466891.29E-1985140IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-1986137IPR006447Myb domain, plants
SMARTSM007171.1E-1087137IPR001005SANT/Myb domain
PfamPF002494.3E-1388134IPR001005SANT/Myb domain
CDDcd001672.13E-1190135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASMYWKRHD DKRFESALAL FTEDYPNRFA TIANHLQIPV ADVMHYYEAL VHDIDLIESD  60
QVVVIDYPDC SGGVSSKTKH VKKDQKRRNP WTEEEHRRFL EGLDKFGKGD WKNISRMNVR  120
TRTPTQVASH AQKYFLRLES KIKKRSSIHD ISPVPDVADN VNVPRSDLDS TMGQPHFGQQ  180
MP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086VKKDQKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34470
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122731.12e-77PREDICTED: transcription factor DIVARICATA-like
RefseqXP_013730893.12e-77transcription factor DIVARICATA-like
SwissprotQ8S9H75e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A398AZ514e-76A0A398AZ51_BRACM; Uncharacterized protein
TrEMBLM4EZ874e-76M4EZ87_BRARP; Uncharacterized protein
STRINGBra034130.1-P7e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.15e-53MYB_related family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]