PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g36310

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 203aa MW: 23330 Da PI: 9.942

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g36310	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.5	1.4e-14	31	121	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k+ +p +++ + +p +f+ + g ++ s t+t++++ g + ++++ ++ ++++++++GW+eF++a+ L g + F+++g+s+f +v++f+ Tp1g36310 31 FMKIILPLTLEEKK-MKIPARFV-RLG--PKLSDTVTIQTPAGFKRSIRI--KRIGDKVWFENGWSEFAEAHSLSKGHLLYFHYQGNSSF--LVMIFDV 121 56666666666665.******.555..55889************..******************************9..*99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.9E-19	25	122	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.4E-18	28	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.47E-13	29	120	No hit	No description
PROSITE profile	PS50863	11.928	30	122	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-15	31	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.1E-12	31	121	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKTTQRSSVR VASAASQRRQ TPESGPAVKK FMKIILPLTL EEKKMKIPAR FVRLGPKLSD 60 TVTIQTPAGF KRSIRIKRIG DKVWFENGWS EFAEAHSLSK GHLLYFHYQG NSSFLVMIFD 120 VSASEIDYPL DKSSDDESSE GVIDLEELLT KKPRVNVKSE KITIEIEEDK RALRKRKRSS 180 ENLCFFWFFP DIYLCGFELV IGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g36310

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602987.1	4e-82	PREDICTED: B3 domain-containing protein At1g49475 isoform X1
Refseq	XP_013720044.1	4e-82	B3 domain-containing protein At1g49475-like isoform X1
Swissprot	Q9XIB4	2e-69	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A0D3DJK8	9e-81	A0A0D3DJK8_BRAOL; Uncharacterized protein
STRING	Bo8g011590.1	2e-81	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	4e-64	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]