PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g36610

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 402aa MW: 43715.8 Da PI: 9.4027

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g36610	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.7	1.2e-13	323	368	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + Tp1g36610 323 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQA 368 79***************************************86544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-12	319	384	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	321	372	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-11	323	370	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.88E-24	323	375	No hit	No description
SuperFamily	SSF57959	1.48E-9	323	372	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.1E-13	323	371	No hit	No description
PROSITE pattern	PS00036	0	326	341	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MGTHINFNNL GGDSSGVNGS NYNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE 60 LLKNIWTAEE TQAIMTTTSS IAAVQSSTGC VPGGNLLQRQ GSLTLPRTLS QKTVDEVWKN 120 LMSKESDSGM DAPERQQTLG EMTLEAFLLR AGVVREDNNN CTQQNENSSS GFYANNGTSA 180 GLGFGFSQPN QNNISFSGNN SSMILNQAPG LGLKVGGTMQ QQQPHQQQLQ QPHQRLPPTI 240 FPKQANVTFA APVNMVKKGL FEAADGPVNT NSGFAAMGGA GVTVASTSPG TSSAENNAWS 300 SPVPYVFGRG RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIENLKQLN 360 QDLQRKQAEI MRTQTNEVKE TSKNLPCLAK TQCLRRTLTG PW

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MGTHINFNNL GGDSSGVNGS NYNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE  60
LLKNIWTAEE TQAIMTTTSS IAAVQSSTGC VPGGNLLQRQ GSLTLPRTLS QKTVDEVWKN  120
LMSKESDSGM DAPERQQTLG EMTLEAFLLR AGVVREDNNN CTQQNENSSS GFYANNGTSA  180
GLGFGFSQPN QNNISFSGNN SSMILNQAPG LGLKVGGTMQ QQQPHQQQLQ QPHQRLPPTI  240
FPKQANVTFA APVNMVKKGL FEAADGPVNT NSGFAAMGGA GVTVASTSPG TSSAENNAWS  300
SPVPYVFGRG RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIENLKQLN  360
QDLQRKQAEI MRTQTNEVKE TSKNLPCLAK TQCLRRTLTG PW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g36610

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393221.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4
Refseq	XP_024006021.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	V4KKT2	0.0	V4KKT2_EUTSA; Uncharacterized protein
STRING	XP_006393221.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]