PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g37420
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 534aa    MW: 59511.7 Da    PI: 5.4614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g37420genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4441e-1351665343374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                 +L+ecA+av++ d  ++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++  aN aI
  Tp1g37420 166 GTLYECAKAVENYDVGMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLIARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAI 262
                689****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  l  +g+rL k+Ae +gvpfef+  +a   +++e+e+L v++gE
  Tp1g37420 263 AEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLDLVGQRLGKLAEMCGVPFEFRG-AALCGTEVEIEKLGVRNGE 361
                ************************************************999999**************************.899**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn+ l lh+++desv++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++ac
  Tp1g37420 362 ALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIAC 461
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                egaer+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  Tp1g37420 462 EGAEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 534
                *********************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.435138515IPR005202Transcription factor GRAS
PfamPF035143.6E-133166534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEATHEHIIQ DGSSMFYHQP SSVQQMDISV QTFDSYCTLE SSSGTKSHPC LNTNNNTSST  60
TSFSSNESPI SQSNNNTNNN TSRFSEFNHS PDDNNNSPLS GSSATNNNET ELSVMLKDLE  120
TAMMEPDIDS SFNGYDHQEG FGQQHRAVSS AMYRSMEMIS RGDLKGTLYE CAKAVENYDV  180
GMTDWLISQL QQMVSVSGEP VQRLGAYMLE GLIARLASSG SSIYKALRCK DPTGPELLTY  240
MHILYEACPY FKFGYESANG AIAEAVKNES FVHIIDFQIS QGGQWVSLIR ALGARPGGPP  300
KVRITGIDDP RSSFARQGGL DLVGQRLGKL AEMCGVPFEF RGAALCGTEV EIEKLGVRNG  360
EALAVNFPLV LHHMPDESVT VENHRDRLLR LVKRLSPNVV TLVEQEANTN TAPFLPRFVE  420
TMNHYLAVFE SIDVKLARDH KERINVEQHC LAREVVNLIA CEGAEREERH EPLGKWRSRF  480
HMAGFKPYPL SSYVNATIKG LLESYSEKYT LEERDGALYL GWKNQPLITS CAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611675347375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g37420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527240.0AK352724.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006003.10.0scarecrow-like protein 5
RefseqXP_024006004.10.0scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLE4MW270.0E4MW27_EUTHA; mRNA, clone: RTFL01-03-J19
TrEMBLV4KKG40.0V4KKG4_EUTSA; Uncharacterized protein
STRINGXP_006393131.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]