PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g37790

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 229aa MW: 25750.2 Da PI: 6.5402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g37790	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.1e-12	73	119	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ Tp1g37790 73 SKACREKQRRDRLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 119 5678********************9...9************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.855	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.01E-8	72	125	No hit	No description
SuperFamily	SSF47459	7.33E-13	73	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-12	73	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	73	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-8	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVSPENTNWL SDYPLVDGAF SDQNPTFNWQ IDQIDGSASV SVEVDGFLCD SDVIKEPGSK 60 KRIKSESCAG SSSKACREKQ RRDRLNDKFT ELSSILEPGR APKTDKVAII NDAIRMVNQV 120 RDEAQKLKDL NSSLQEKIKE LKDEKNELRD EKQKLKIEKE RIEQQLKAIK THPLPQPCFL 180 PNPQTVSQAQ APGSKLVPFT TYPGFAMWQF MPPAAVDTSQ DHVLRPPVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g37790

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353406	0.0	AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393084.1	1e-157	transcription factor bHLH115
Swissprot	Q9C682	1e-155	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A1J3CVH6	1e-157	A0A1J3CVH6_NOCCA; Uncharacterized protein
STRING	XP_006393084.1	1e-156	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-157	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]