PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g38240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 302aa    MW: 32823.5 Da    PI: 7.1104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g38240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99e-16224259134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg
  Tp1g38240 224 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANKG 259
                ****865556***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51378113IPR010399Tify domain
SMARTSM009797.6E-1178113IPR010399Tify domain
PfamPF062003.0E-1180112IPR010399Tify domain
PROSITE profilePS5101712.987148190IPR010402CCT domain
PfamPF062032.1E-15148190IPR010402CCT domain
PROSITE profilePS501148.893218266IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-12218271IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12219282No hitNo description
Gene3DG3DSA:3.30.50.103.6E-15222265IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.54E-14223267No hitNo description
PfamPF003201.2E-13224259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDDDLHGSNG RMHIGEAQGP MHVQYEHHAL QHIHNGSGMV DDHADGGNSG GMSEGVETDI  60
PSHPGNITDN RGEVVDRGSE QGDQLTLSFQ GQVYVFDSVL PEKVQAVLLL LGGRELPQPP  120
PTGVGSSHQN NRVLGLPGTP QRFSMPQRLA SLVRFREKRK GRNFDKKIRY TVRKEVALRM  180
QRNKGQFTSA KSNNDEAASA GSSWGSNQTW AIEGSEAQNQ EISCRHCGIG EKSTPMMRRG  240
PEGPRTLCNA CGLMWANKGA LRDLSKGAPQ TAQNLPLNKN EDAILEADQM IVSAANNISN  300
SQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g38240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305455.10.0GATA transcription factor 28 isoform X1
RefseqXP_023644658.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP10.0R0IMP1_9BRAS; Uncharacterized protein
STRINGCagra.2346s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2