PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g38340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 214aa    MW: 23665.4 Da    PI: 9.5296
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g38340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.1e-403292262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+ 
  Tp1g38340 32 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGSRKNSKRG 92
               57899****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-272581IPR003851Zinc finger, Dof-type
PfamPF027014.3E-333490IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3483690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQDLTSAAAY YHHQSMMMTA AATAKQQPGL PEQEQLKCPR CDSPNTKFCY YNNYNLSQPR  60
HFCKNCRRYW TKGGSLRNIP VGGGSRKNSK RGSSSSSSPS SNPKNNKTVT VSDQKQPSSE  120
ESRSKLVEEE RITGDSGREM DPTRMLYGLP VGDPIGGSFG SMLLPSNMQM RGGVGYETGS  180
RWYPGMDLGL GPGSGFRRND DAWTELAMNR VEKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g38340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-35AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868162.15e-97dof zinc finger protein DOF1.7
SwissprotO821551e-97DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLD7KHU91e-95D7KHU9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4241__AT1G51700.12e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-81DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]