PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g39740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 184aa    MW: 20195.8 Da    PI: 9.3303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g39740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182171256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrdp++   r+r++lg+f+ta +Aa+a++ a+++++g+
  Tp1g39740 21 RYRGVRKRP-WGRYAAEIRDPVK---RTRVWLGTFDTAHQAARAYDTAAREFRGA 71
               59*******.**********755...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-312179IPR001471AP2/ERF domain
PfamPF008477.1E-122170IPR001471AP2/ERF domain
SMARTSM003803.8E-362184IPR001471AP2/ERF domain
CDDcd000183.30E-312178No hitNo description
PROSITE profilePS5103224.0122178IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212179IPR016177DNA-binding domain
PRINTSPR003676.4E-112233IPR001471AP2/ERF domain
PRINTSPR003676.4E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTKMGFIPDP NPMESNAKEI RYRGVRKRPW GRYAAEIRDP VKRTRVWLGT FDTAHQAARA  60
YDTAAREFRG AKAKTNFPTL LELNGKDGWF ARSTGQSSTV NSVSPMAAAR MVTPPQLELS  120
LGGASYQVPV ARPVYYYNMP AFPSAATCGV HSESDSSSVL EFESGDEKTP PPLNLDLNLA  180
PPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20978272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g39740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4997161e-106AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107000.12e-82PREDICTED: ethylene-responsive transcription factor 8
SwissprotQ9MAI59e-64ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLA0A3P6BVV63e-82A0A3P6BVV6_BRACM; Uncharacterized protein
STRINGBostr.0124s0109.1.p1e-82(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-58ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]