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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp1g40500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
Trihelix |
| Protein Properties |
Length: 373aa MW: 41047.8 Da PI: 8.0415 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp1g40500 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.4 | 6.7e-17 | 86 | 172 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le
Tp1g40500 86 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnnsRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 172
7*************************************9999999***************************98..56668******98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0048831 | Biological Process | regulation of shoot system development |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MEEEDETQSL QSPGDSLSPA PSSPPILPTS DVTVASVTKP PVVSSQSPSR NALALVVHTP 60
SVTGGSGNRN GRSSGGGGGG GGRDDCWSEE ATKVLIDAWG DRFSEPGKGT LKQQHWKEVA 120
EIVNNSRQCK YPKTDIQCKN RIDTVKKKYK QEKAKIASGD GPSKWVFFKK LESLIGGNTT 180
IAISKSSDKA PMGVLMNSRS NQYKRQAKGT QILQQGDLKR SSDSMRWHFR KRSASETESE 240
SDPEPEPSPD SAESLPPSQL PQPLSFQLPK RLKMDKSGGS GVGEVAKAIL GFTEAYEKAE 300
TAKLKLMLEL EKERMKFAKE MELQRMQFLK TQMEITENNQ AEERSKRGER RIIDEDDDDD 360
DDRNVKNNGN VSS
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 218 | 231 | KRSSDSMRWHFRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352921 | 0.0 | AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22. |
