PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g40670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 546aa    MW: 60885.5 Da    PI: 4.5845
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g40670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.3e-11236284346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                       WT+eE++ l+ +++++G g Wk I +         +Rt  +++++w++
        Tp1g40670 236 IWTKEEEDVLLAGIAKHGAGKWKDILADPDfaaqlVNRTKISLRDKWRN 284
                      6***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005260.00131276IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150413.6981481IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.23E-61484IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-51474IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5129414.603229290IPR017930Myb domain
SuperFamilySSF466892.66E-15231295IPR009057Homeodomain-like
SMARTSM007172.3E-8233288IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-13234285IPR009057Homeodomain-like
CDDcd116601.70E-15237287No hitNo description
PfamPF002499.8E-8237285IPR001005SANT/Myb domain
SMARTSM005261.4E-11320395IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.609323400IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-10337402IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-7338392IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-10338402IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDPANRSSDV EAVSEVTYEE ILIAAVSTIN DGNGADIVGI YEFIEDRYNV PPDYKMLLEE  60
ELETLVSHNK LEVETRYKIV PGAVTQTSNA EDSTKSQEIG DDASISSERA LEIREAAAKA  120
IAEADQKEFE AKEACEALEK VKELAERSDM ILELAQETYE RCNVHLSTSS SSSIHHHHST  180
LFASFLAGAK GETVLLNVPS SSGDSEVVGV ESEGDSDGRE TKTTKGIEML GHPKKIWTKE  240
EEDVLLAGIA KHGAGKWKDI LADPDFAAQL VNRTKISLRD KWRNMNHRVK PMKEESKKRA  300
LKSAFISISP AKASSQFVSS KPSPNSLSDM SNESWCNAMV FEAISTINDE NGSDLSAILS  360
FIEERHEVPE NFRKLLSNSL RLLVSQEKLE KLLNRYKIST RKAMNDSVVS TTSEETQEID  420
SAVEAAANEE LKRIREFPEE INEWRQEPQK FREFVSEILT VLISQGKLAK DLNSLKITEL  480
EKKLLEVAPE IVAAKLAESE NKSFIAAEAV KEAQEMQKMA EESQLMHQLC LEIYEECALG  540
KEVLLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g40670
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392696.21e-120telomere repeat-binding factor 4
TrEMBLR0GQR36e-99R0GQR3_9BRAS; Uncharacterized protein
STRINGBostr.7128s0053.1.p1e-121(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1668455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.29e-41MYB_related family protein