PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g01590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 295aa    MW: 33232.5 Da    PI: 6.6138
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g01590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072452772254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +yp+++++++L +++gL+ +q+ +WF N+R +
  Tp2g01590 245 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 277
                58*****************************87 PP
2ELK22.72.3e-08198219122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK +L++++++++ ++++E++
  Tp2g01590 198 ELKLELKQGFKSRIEDVREEIM 219
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.4E-193074IPR005540KNOX1
PfamPF037902.0E-163273IPR005540KNOX1
SMARTSM012563.6E-2584139IPR005541KNOX2
PfamPF037913.5E-1988138IPR005541KNOX2
PROSITE profilePS512139.202198218IPR005539ELK domain
PROSITE profilePS5007111.823218281IPR001356Homeobox domain
SMARTSM003896.3E-11220285IPR001356Homeobox domain
SuperFamilySSF466892.52E-16220284IPR009057Homeodomain-like
CDDcd000861.37E-11221282No hitNo description
Gene3DG3DSA:1.10.10.605.1E-25225283IPR009057Homeodomain-like
PfamPF059203.3E-18238277IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQEPALGMIG ATVGGGGGDG DAAVMAEQNR QMKGEIATHP MYEQLLAAHV ACLRVATPID  60
QLPIIEAQLS HSHHLLRSYA STAVGFSHHD RHELDNFLAQ YVMVLCSFKE QLQQHVRVHA  120
VEAVMACREI ENNLHSLTGA TLGEGSGATM SEEEDDLQMD FSSDNSGVDF SGGHDMTGFG  180
PLLPTESERS LMERVRQELK LELKQGFKSR IEDVREEIMR KRRAGKLPGD TTTVLKNWWQ  240
QHCKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNSHSLTSLK SKRKH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g01590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430375.10.0PREDICTED: homeobox protein knotted-1-like 7
RefseqXP_010473525.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1J3GZ740.0A0A1J3GZ74_NOCCA; Homeobox protein HD1
STRINGXP_010430375.10.0(Camelina sativa)
STRINGXP_010473525.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]