PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g02820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 401aa    MW: 44188.4 Da    PI: 5.1512
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g02820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573123.11.4e-38171259297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                +fqrlw+eeDei++LqG+idfka+tgksp++d++  y+f+kksisf+vsk+q+++Kir+LKkK+ +k+k        +f+k+hdqk++ l+k iWg
  Tp2g02820 171 AFQRLWTEEDEIAVLQGMIDFKAETGKSPYEDTNIYYDFIKKSISFEVSKNQFMDKIRSLKKKYMGKEKP-------TFTKPHDQKSYRLCKYIWG 259
                69**************************************************************998776.......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.0E-31172259IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTKKRDPLEN PPAASSSDDD EVETSAGEEE EEEEDDDSSS EEENDSKIPV KASSSSAVTI  60
AVPGKTTLAS VTASSAKQPS DSDSGSETET DSDSETDQAP NQGSRKAVTV AAKPKKEEAL  120
PPAAALALPA VKSGTKRPSE GISRETNSKR AKKVTSGDEE KKIGEDSKKP AFQRLWTEED  180
EIAVLQGMID FKAETGKSPY EDTNIYYDFI KKSISFEVSK NQFMDKIRSL KKKYMGKEKP  240
TFTKPHDQKS YRLCKYIWGP DGMGLESAVK SNGVSKKSQK TKKLDSVKQE LSFASSPNGK  300
TVDDEKKVMV LGGDVESSLA AKKYDWFENS FLVRAIAGFG IDEHYVKQRW SLMPAETKKK  360
VEEKLKQLQA KEIEFVLQKT EILHDVTSMI AEASKNKPLD L
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g02820
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391972.10.0probable transcription factor At1g61730
SwissprotQ9SYA91e-129STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A3P6C3X00.0A0A3P6C3X0_BRAOL; Uncharacterized protein
TrEMBLV4KPG50.0V4KPG5_EUTSA; Uncharacterized protein
STRINGXP_006391972.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-93DNA-binding storekeeper protein-related transcriptional regulator