PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g03770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 218aa    MW: 25224.1 Da    PI: 8.494
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g03770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-131150139
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavii 39
               ++ie k+ ++vtf+kRrng++ KA EL+ L  ++++a++ 
  Tp2g03770 11 EKIEKKTVKSVTFTKRRNGLFRKAAELCLLSsETQIAILA 50
               579***************************6368888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.451340IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-10363IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-14578IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-9525IPR002100Transcription factor, MADS-box
PfamPF003191.9E-111255IPR002100Transcription factor, MADS-box
CDDcd002661.47E-151782No hitNo description
PRINTSPR004043.9E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGGKKCKIKI EKIEKKTVKS VTFTKRRNGL FRKAAELCLL SSETQIAILA TPPSTNSHVS  60
FFSFGHSSVD HVVSSLLNDQ FPLEATTQEN MPGLGFWWED EGFERLENVD DLKDATDAIT  120
RTLNNLRLRL DTVKSTQRDE GLVIHQDEGS RLRNTETNNN NEERRINLLD LKELLVLKVW  180
LRMRRRILWT LMICSLTSIL IYYFDLINFR LCNMTCLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g03770
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463935.14e-75PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A0D3E5677e-73A0A0D3E567_BRAOL; Uncharacterized protein
STRINGBo9g043530.11e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.18e-40AGAMOUS-like 55