PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g04430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 327aa    MW: 37912.9 Da    PI: 6.6461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g04430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41e-13812010128
        NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvf 108
                +de ++++yL+k + + +   +++++++d+++ +P  +        k+  f + + +++a g r+     sg W+  g+dk + ++ +g+l g kk+L f
  Tp2g04430   8 SDEKIISDYLEKMIVNGDSWPQHFLEDADVFSKNPMGIF-D----FKKPTFVIVKPRTEACG-RTDG-CGSGCWRIIGRDKLIRCEgSGKLLGFKKILKF 100
                79***********88888666588**************5.3....34445666666666655.5555.479*************9977889********* PP

        NAM 109 ykgrapkgektdWvmheyrl 128
                 ++++ +  k +Wvm+eyrl
  Tp2g04430 101 CRETKGREYKRSWVMEEYRL 120
                *99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6921138IPR003441NAC domain
SuperFamilySSF1019411.44E-258136IPR003441NAC domain
PfamPF023651.1E-88120IPR003441NAC domain
SuperFamilySSF1019413.53E-19151306IPR003441NAC domain
PROSITE profilePS5100513.421163309IPR003441NAC domain
PfamPF023652.3E-4168293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDLIKASDE KIISDYLEKM IVNGDSWPQH FLEDADVFSK NPMGIFDFKK PTFVIVKPRT  60
EACGRTDGCG SGCWRIIGRD KLIRCEGSGK LLGFKKILKF CRETKGREYK RSWVMEEYRL  120
TRKQNRKQDH VLCKIRLLFQ TEINFLLAKH FSYSSATLPE TQSLHAYGFV FTNPELEIAY  180
YLWPIISSDG NKWPSYVTNN VYCMHPLMLV DCADQLFFDY GLCFFANLTE ASGITDGCDS  240
GCWRMMEPFQ PMKWETSKVG VKTVLTFLEK ERPIYVFNGE DVDVTWIMEE YTLTNDEKLN  300
KAICVIKASL FFLLLPLNFL ISYISTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g04430
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176235.11e-124NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLA0A3P6G3Y11e-123A0A3P6G3Y1_BRAOL; Uncharacterized protein
TrEMBLO807521e-123O80752_ARATH; Apical meristem formation protein-related
STRINGAT1G60300.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-117NAC family protein