PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g04700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 189aa    MW: 21021.2 Da    PI: 7.8264
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g04700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.3e-38171171100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+apyf aeq +++fa++hk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+aela++++
  Tp2g04700  17 PCGACKFLRRKCVRGCVFAPYFDAEQgTARFAAIHKVFGASNTSKMLLRLPLNKRLDAVVTLCYEALARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQA 116
                7***********************9989********************************************************************9997 PP

     DUF260 100 e 100
                +
  Tp2g04700 117 R 117
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.09316118IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3717115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMTGNLNGGG RGGGERPCGA CKFLRRKCVR GCVFAPYFDA EQGTARFAAI HKVFGASNTS  60
KMLLRLPLNK RLDAVVTLCY EALARLRDPV YGSVGHLFSL QHQVMNLQAE LAHVQARLST  120
FQRFPVQPLF DLAHDNEYTM QPTNLDVVRE EEPLPPQAGI DEDGEFQELT MQFVSKYLPT  180
VKLPACTFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-34131157110LOB family transfactor Ramosa2.1
5ly0_B2e-34131157110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g04700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738561e-129AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.16e-97PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.16e-97PREDICTED: LOB domain-containing protein 19-like
SwissprotO221324e-94LBD19_ARATH; LOB domain-containing protein 19
TrEMBLD7LCJ02e-94D7LCJ0_ARALL; Predicted protein
TrEMBLV4KMP12e-94V4KMP1_EUTSA; Uncharacterized protein
STRINGBostr.25993s0234.1.p5e-97(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-97LOB domain-containing protein 19