PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g04920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 249aa    MW: 28158.5 Da    PI: 6.0669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g04920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-11130177455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Tp2g04920 130 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 177
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-9124181No hitNo description
SuperFamilySSF474594.71E-18124195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-18126195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPSGMMNEG TTFNLSEIWQ FPMNIGDSSA RAFAGPNHIS DSNLTVAGDQ ARMRHALSRA  60
VVEGISGAWK RQEEESESAK NECENKRQKI DEVCDGKTEA ETNMDQKKQP IEPTKDYIHV  120
RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI GKALVLDEII NYIQSLQRQV  180
EFLSMKLEAV NSRMNPSIDV FKPKEFGQEA FENQEMQFGS QSRREYSRGA SPEWLHMQIG  240
SSGFERASS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g04920
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0863731e-164AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564749.11e-148transcription factor BIG PETAL P (BPE)
SwissprotQ0JXE71e-116BPE_ARATH; Transcription factor BPE
TrEMBLA0A178WHK31e-147A0A178WHK3_ARATH; ZCW32
STRINGscaffold_200689.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-142BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]