PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g05020

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 149aa MW: 17389 Da PI: 8.8876

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g05020	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.3	1.4e-12	51	96	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr ++NRe+A+rsR+RKk + eeL+ +v L +N++Lk++l Tp2g05020 51 RKRRRTMSNRESAKRSRLRKKRRFEELTGEVNRLNLKNQELKNRLA 96 577999************************************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-12	44	97	No hit	No description
SMART	SM00338	1.1E-11	46	118	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	49	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.52E-9	51	98	No hit	No description
Pfam	PF00170	8.8E-10	51	97	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MFSTNLEPVH ICFDDAMITG DEITEILAFL QSDELENPTG SNELVEPVDE RKRRRTMSNR 60 ESAKRSRLRK KRRFEELTGE VNRLNLKNQE LKNRLANVLS CGNVISRENN RLKTESVCLE 120 IRLLELYRFL VAMQMPISTR LSYITKLSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	54	RKRRR
2	50	55	RKRRRT
3	52	72	RRRTMSNRESAKRSRLRKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g05020

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392278.1	9e-79	basic leucine zipper 4
Swissprot	Q9LQ65	5e-74	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	V4KEK9	2e-77	V4KEK9_EUTSA; Uncharacterized protein
STRING	XP_006392278.1	3e-78	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	2e-68	basic leucine-zipper 4

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]