PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g05390
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 242aa    MW: 27064.3 Da    PI: 4.5705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g05390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11194223130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      r++W++eEde l+ avk++G g+W++Ia++
        Tp2g05390 194 RKKWSAEEDEELIAAVKRHGEGSWALIAKE 223
                      799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.568189242IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13189235IPR009057Homeodomain-like
SuperFamilySSF466895.17E-10190235IPR009057Homeodomain-like
SMARTSM007172.7E-4193242IPR001005SANT/Myb domain
PfamPF002491.4E-9194223IPR001005SANT/Myb domain
CDDcd116601.31E-11195236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVDSSNKKRK EFISEGDIAT LLQRYDTMTI LKLLQEMSYY AEPKIDWNEL VKKTSTGITN  60
AREYQLLWRH LAYRDSLLPM EDNAQLPDDD SDMECELEAS PAVNVDAVAE AVAHVKVIAA  120
SYVPSESDIP EDSTFEAPLT INIPYGLHRG PQEPSDSYWS SRGMNITFPV SLQKAAEGHN  180
GNGLGSSMAP RKRRKKWSAE EDEELIAAVK RHGEGSWALI AKEEFEGERT ASQLSQVVLL  240
FG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g05390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392319.21e-155nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLA0A1J3CHU11e-154A0A1J3CHU1_NOCCA; Uncharacterized protein
TrEMBLV4JW051e-154V4JW05_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006392319.11e-155(Eutrema salsugineum)
STRINGXP_010511098.11e-154(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.11e-142MYB_related family protein