PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g05480

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TCP

Protein Properties

Length: 407aa MW: 43367.3 Da PI: 6.3446

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g05480	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.8	1.1e-35	53	221	3	122
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +s++s+ s + Tp2g05480 53 VAKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSNGSTLSTPpsksvplygalgl 152 689*****************************************************************99877777777777555556667778888888 PP TCP 89 ............................kaaksaa.kskksqksaasalnlak..esrakarar....a 122 +++++++ +++++q+ +++ + es +++r r + Tp2g05480 153 shhhhqyeeqggafgahtppllgfhhhlQQQQQHHqNQNQNQRLDQTPAETIPdgESFSRKRYRsvdlS 221 888888889999999999999888766522222222333333222222222221222233333322332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.6E-45	57	225	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	58	112	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDLPDGAATA RGGGSRQLVD ASLSIVPRST SLEDAALTTT SSAAAAATTS GVVAKRSTKD 60 RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA 120 NFSSLSVSLR SNGSTLSTPP SKSVPLYGAL GLSHHHHQYE EQGGAFGAHT PPLLGFHHHL 180 QQQQQHHQNQ NQNQRLDQTP AETIPDGESF SRKRYRSVDL SKENDDEEQN ENKSLKESES 240 PAAATTAPMW AVAPTSRSAG GNTFWMLPVP TTTANQQAAV ESSSNNNRAH MWPFGVGAGA 300 GAGAATHFMA GTGFSFPMDQ YRGSSLQLGS FLAQPQQPNQ NLGLSMPDTN LGVLAALNAA 360 YSRGANANAN ANAEQVNNAV EHKQQQQQQQ QSDQDDDSRD ENSNSDE

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDLPDGAATA RGGGSRQLVD ASLSIVPRST SLEDAALTTT SSAAAAATTS GVVAKRSTKD  60
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGTGTIPA  120
NFSSLSVSLR SNGSTLSTPP SKSVPLYGAL GLSHHHHQYE EQGGAFGAHT PPLLGFHHHL  180
QQQQQHHQNQ NQNQRLDQTP AETIPDGESF SRKRYRSVDL SKENDDEEQN ENKSLKESES  240
PAAATTAPMW AVAPTSRSAG GNTFWMLPVP TTTANQQAAV ESSSNNNRAH MWPFGVGAGA  300
GAGAATHFMA GTGFSFPMDQ YRGSSLQLGS FLAQPQQPNQ NLGLSMPDTN LGVLAALNAA  360
YSRGANANAN ANAEQVNNAV EHKQQQQQQQ QSDQDDDSRD ENSNSDE

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g05480

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113333.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1J3H9R6	0.0	A0A1J3H9R6_NOCCA; Transcription factor TCP8
STRING	Bra027886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-124	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]