PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g07220

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 194aa MW: 22206.7 Da PI: 9.9882

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g07220	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.2e-16	95	182	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k +++s+ + +l+lp +f+++h k ++ +tl de+g+++e + k+ + l++GW +F+ a++L gD +vF+l++ + f +v + Tp2g07220 95 FVKSMLQSHISGGFWLSLPADFCRSHLRK--QDGIITLIDEEGEEFETVY--LAKK--IGLSGGWMGFAVAHNLAYGDALVFELVRPTVF--KVYI 182 89**********************544..3448***********..5665..44**********************987777..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.47E-22	92	186	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.28E-23	93	184	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.1E-19	93	186	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.449	95	186	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-14	95	182	IPR003340	B3 DNA binding domain
SMART	SM01019	2.7E-22	95	186	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MVVVKQSPYE EFRLRRVEDN KKRMEALNLP NLCQNLRSKS VKTSPVLVRQ VQIPRRMGKG 60 RNLSNRVYVS EEIREEAFSK AERLQDDLRD IFPSFVKSML QSHISGGFWL SLPADFCRSH 120 LRKQDGIITL IDEEGEEFET VYLAKKIGLS GGWMGFAVAH NLAYGDALVF ELVRPTVFKV 180 YITRVKGSGE SPKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g07220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007647	2e-55	AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBank	CP002688	2e-55	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123694.2	1e-113	PREDICTED: B3 domain-containing protein At5g42700
Refseq	XP_013659682.1	1e-113	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	4e-95	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A3P6AD59	1e-111	A0A3P6AD59_BRACM; Uncharacterized protein
STRING	Bo2g116250.1	1e-110	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-97	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]