PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g07430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ZF-HD
Protein Properties Length: 229aa    MW: 26465 Da    PI: 9.7415
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g07430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.96.6e-2558110257
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  +++rY eC+kN+Aa++G++a+DGCgEf++++      ++ +CaACgCHR+FHR ev
    Tp2g07430  58 TNARYGECRKNQAAAIGTTAYDGCGEFVSATAG---EDSANCAACGCHRSFHREEV 110
                  5789*************************9444...599**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-1960109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.6E-2361110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.89962109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1762111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-14159228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-21161228IPR009057Homeodomain-like
PROSITE profilePS500718.681168229IPR001356Homeobox domain
TIGRFAMsTIGR015654.8E-27171227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDEIRSKQQE KRRRRNEGTP ICRETSDHVH YPPTRLTKCT RSRHAPPPIL KSIFQVTTNA  60
RYGECRKNQA AAIGTTAYDG CGEFVSATAG EDSANCAACG CHRSFHREEV FSNGVSKTIL  120
EVLKISSHEF RQIFCSPYGD GKSKEKKRIA IDRSNGGDIV EEEEAGRGRV KRLKTKFTEE  180
QTEKMRKYAE KLRWKVNPES REEVERFCIE VGVNRRKFMI WMYNHKEKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-121712261873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g07430
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416476.11e-111zinc-finger homeodomain protein 13
SwissprotQ9FMY71e-94ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A1J3E1G31e-116A0A1J3E1G3_NOCCA; Zinc-finger homeodomain protein 13
STRINGXP_006416476.11e-110(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.15e-97homeobox protein 27